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Publikationen

Stand: September 2016

 

2016

Bogner CW, Kariuki GM, Elashry A, Sichtermann G, Buch AK, Mishra B, Thines M, Grundler FMW, Schouten A (2016) Fungal root endophytes of tomato from Kenya and their nematode biocontrol potential. Mycological Progress, 15(3), 1-17.

Glynou K, Ali T, Buch AK, Hagi Kia S, Ploch S, Xia X, Celik A, Thines M, Maciá-Vicente JG (2016) The local environment determines the assembly of root endophytic fungi at a continental scale. Environmental Microbiology doi:10.1111/1462-2920.13112.

Hennicke F, Cheikh-Ali Z, Liebisch T, Maciá-Vicente JG, Bode HB, Piepenbring M (2016) Morphology, molecular phylogeny, and triterpenic acid profiles of commercially grown ’Ganoderma lucidum’ strains from East Asia and Europe. Phytochemistry, 127, 29-37.

Herzog R, Solovyeva I, Rühl M, Thines M, Hennicke F (2016) Dikaryotic fruiting body development in a single dikaryon of Agrocybe aegerita and the spectrum of monokaryotic fruiting types in its monokaryotic progeny. Mycological Progress 15: 947-957.

Maciá-Vicente JG, Glynou K, Piepenbring M (2016) A new species of of Exophiala associated with roots. Mycol Progress 15:18.

Philipp O, Osiewacz HD, Koch I (2016) Path2PPI: an R package to predict protein-protein interaction networks for a set of proteins. Bioinformatics doi:10.1093/bioinformatics/btv765

Popa  F, Jimenéz SY, Weisenborn J, Donges K,  Rexer KH, Piepenbring M (2016) A new Laccaria species from cloud forest of Fortuna, Panama. Mycol Progress (online).

Schimming O, Schmitt I, Bode HB (2016) Identification of the Sfp-Type PPTase EppA from the Lichenized Fungus Evernia prunastri. PLoS ONE 11(1): e0145624. doi:10.1371/journal.pone.0145624.

Tahir A, Schmuker A, Runge F, Solovyeva I, Nigrelli L, Paule J, Buch AK, Xia X, Ploch S, Orre O, Kummer V, Linde-Laursen I, Orgaard M, Hauser TP, Celic A, Thines M (2016) Morphology, phylogeny, and taxonomy of Microthlaspi (Brassicaceae: Coluteocarpeae) and related genera. Taxon, 65(1), 79-98.

Tobias NJ, Mishra B, Gupta DK, Sharma R, Thines M, Stinear TP, Bode HB (2016) Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle. BMC genomics, 17(1), 537.

 

Nicht begutachtet

Splivallo R, Cullere L (2016) The smell of truffles: from aroma biosynthesis to product quality. True truffles (Tuber spp.) in the World – Soil Ecology, Systematics and Biochemistry. Springer Verlag pp. 393-407 (peer-reviewed book chapter).

 

2015

Cheikh-Ali Z, Glynou K, Tahir A, Ploch S, Thines M, Bode HB, Maciá-Vicente JG (2015) Diversity of exophillic acid derivatives in strains of an endophytic Exophiala sp. Phytochemistry doi: 10.1016/j.phytochem.2015.08.006.

Choi YJ, Beakes G, Glockling S, Kruse J, Nam B, Nigrelli L, Ploch S, Shin H-D, Shivas G, Telle S, Voglmayr H, Thines M (2015) Towards a universal barcode of oomycetes – a comparison of the cox1 and cox2 loci. Mol Ecol Resources doi:10.1111/1755-0998.12398.

Choi YJ, Klosterman SJ, Kummer V, Voglmayr H, Shin HD, Thines M (2015) Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach. Mol Phylogen Evolution 86, 24-34.

Choi YJ, Thines M (2015) Host Jumps and Radiation, Not Co‐Divergence Drives Diversification of Obligate Pathogens. A Case Study in Downy Mildews and Asteraceae. PloS ONE 10(7) e0133655.

Cruz D, Suárez JP, Piepenbring M (2015) Morphological overview of Tulasnellaceae, two new species of Tulasnella, and new records of Tulasnella spp. from Ecuador. Nova Hedwigia (online).

Fischer F, Filippis C, Osiewacz HD (2015) RCF1-mediated respiratory supercomplexes are integral for lifespan-maintenance in a fungal ageing model. Sci Rep 5:12697, doi:10.1038/srep12697.

Ghobad-Nejhad M, Liu SL, Dai YC, Langer E (2015) Boidinia parva sp. nov. In: Fungal Biodiversity profiles. Cryptogamie Mycologie 36:121-166.

Ghobad-Nejhad M, Liu SL, Dai YC, Langer E (2015) Molecular and morphological evidence reveal a new species in the core Phanerochaete clade (Polyporales). Mycol Progress 14(9), 1-7.

Glynou K, Ali T, Buch AK, Haghi Kia S, Ploch S, Xia X, Çelik A, Thines M, Maciá-Vicente JG (2015) The local environment determines the assembly of  root endophytic fungi at a continental scale. Environmental Microbiology, doi:10.1111/1462-2920.13112

Greshake B, Zehr S, Dal Grande F, Meiser A, Schmitt I, Ebersberger I (2015) Potential and pitfalls of eukaryotic metagenome skimming: A test case for lichens. Epub 2015 Sep 26.

Hemetsberger C, Mueller  AN, Matei A, Herrberger C, Hensel G, Kumlehn J, Mishra B, Sharma R, Thines M,... Doehlemann G (2015) The fungal core effector Pep1 is conserved across smuts of dicots and monocots. New Phytologist 206: 1116-1126.

Judith C, Rossman AY, Kennedy AH, Cáceres O, Piepenbring M (2015) Microchrysosphaera graminicola, an enigmatic new genus and species in the Hypocreales from Panama. Mycol Progress 14:72.

Kitner M, Lebeda A, Sharma R, Runge F, Dvořák P, Tahir A, ... & Thines M (2015) Coincidence of virulence shifts and population genetic changes of Pseudoperonospora cubensis in the Czech Republic. Pl Pathol 64(6), 1461-1470.

Kleofas V, Popa F, Fraatz  MA, Rühl M, Kost GW, Zorn H (2015) Aroma profile of the anise-like odour mushroom Cortinarius odorifer. Flavour Frag J 30:381-386.

Kleofas V, Popa F, Nidenthal E, Rühl M, Kost GW, Zorn H (2015) Volatilom analysis of Calocybe gambosa the flour-, cucumber-like odour mushroom. Mycol Progress, 14:93.

Langer E, Langer G, Popa, F, Rexer KH, Striegel M, Ordynets A, Lysenko L,  Palme S, Riebesehl J, Kost G (2015) Naturalness of selected European beech forests reflected by fungal inventories - A first check-list of fungi of the UNESCO World Natural Heritage National Park Kellerwald-Edersee in Germany. Mycol Progress, 14(11), 1-7.

Mishra B, Solovyeva I, Schmuker A, Thines M (2015) Modelling of structures of ATR1-homologs from sister species of Hyaloperonospora arabidopsidis suggests different patterns for target-mediated and R-protein-mediated selection. Mycol Progress 09/2015; 14(9). doi:10.1007/s11557-015-1086-3.

Molinier V, Murat C, Frochot H, Wipf D, Splivallo R (2015) Fine-scale spatial genetic structure analysis of the black truffle Tuber aestivum and its link to aroma variability. Environ Microbiol 17(8), 3039-3050

Ordynets A, Larsson KH, Langer E (2015) Two new Trechispora species from La Réunion Island. Mycological Progress 14:113,DOI 10.1007/s11557-015-1133-0.

Piepenbring M, Hofmann TA, Unterseher M, Miranda E, Cáceres O (2015) Leaf shedding and seasonal weather changes shape the phenology of fungi in tropical dry-seasonal forest – lessons from two years of monthly surveys in Southwestern Panama. Fungal Ecology 18:83-92.

Riebesehl J, Langer E, Ordynets A, Striegel M, Witzany Ch (2015) Hyphodontia borbonica, a new species from La Réunion. Mycological Progress 14:104,DOI 10.1007/s11557-015-1126-z.

Rector BG, Wang S, Choi YJ, Thines M (2015) First Report of Albugo lepidii Causing White Rust on Broadleaved Pepperweed (Lepidium latifolium) in Nevada and California. Plant Disease 08/2015. doi:10.1094/PDIS-04-15-0425-PDN.

Rodríguez Justavino D, Kirschner R, Piepenbring M (2015) New species and new records of Meliolaceae fom Panama. Fungal Diversity 70:73-84.

Rusch M, Kauschat A, Spielmeyer A, Römpp A, Hausmann H, Zorn H, Hamscher G (2015) Biotransformation of the antibiotic danofloxacin by Xylaria longipes leads to an efficient reduction of its antibacterial activity. J. Agric. Food Chem. 63:6897-6904

Scheckhuber CQ (2015) Analysis of autophagy in Penicillium chrysogenum by using starvation pads in combination with fluorescence microscopy. JoVE 96:e52577.

Scheckhuber CQ (2015) Penicillium chrysogenum as a model system for studying cellular effects of methylglyoxal. BMC Microbiol 15:138.

Schenkel D, Lemfack MC, Piechulla B, Splivallo R (2015) A meta-analysis approach for assessing the diversity and specificity of belowground root and microbial volatiles. Frontiers Pl Sci 6707 doi: 10.3389/fpls.2015.00707

Sharma R, Xia X, Cano LM, Evangelisti E Kemen E, Judelson H, Oome S, Sambles C, Van den Hoogen DJ, Kitner M, Klein J, Meijer HJG, Spring O, Win J, Zipper R, Bode HB, Govers F, Kamoun S, Schornack S,  Studholme DJ, Van den Ackerveken G, Thines M (2015) Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. BMC Genomics 10/2015,16:741. doi:10.1186/s12864-015-1904-7.

Sharma R, Gassel S, Steiger S, Xia X, Bauer R, Sandmann G, Thines M (2015) The genome of the basal agaricomycete Xanthophyllomyces dendrorhous provides insights into the organization of its acetyl-CoA derived pathways and the evolution of Agaricomycotina. BMC Genomics 16:233.

Sharma R, Xia X, Riess K, Bauer R, Thines M (2015) Comparative genomics including the early-diverging smut fungus Ceraceosorus bombacis reveals signatures of parallel evolution within plant and animal pathogens of fungi and oomycetes. Genome Biol Evol 7:evv162.

Solovyeva I, Schmuker A, Cano LM, van Damme M, Ploch S, Kamoun S, Thines M (2015) Evolution of hyaloperonospora effectors: ATR1 effector homologs from sister species of the downy mildew pathogen H. arabidopsidis are not recognised by RPP1WsB. Mycol Progress 14:1-9.

Splivallo R, Ebeler SE (2015) Sulfur volatiles of microbial origin are key contributors to human-sensed truffle aroma. Appl Microbiol Biotechnol 99(6), 2583-2592.

Thines M, Nam B, Nigrelli L, Beakes G, Kraberg A (2015) The diatom parasite Lagenisma coscinodisci (Lagenismatales, Oomycota) is an early diverging lineage of the Saprolegniomycetes. Mycol Progress 14:1-7.

Tobias NJ, Mishra B, Gupta DK, Ke LP, Thines M, Bode HB (2015) Draft genome sequence of Ochrobactrum anthropi Strain ML7 isolated from soil samples in Vinhpuc Province, Vietnam. Genome Announcements 3. Pii:e00218-15.

Vahdatzadeh M, Deveau A, Splivallo R (2015) The role of the microbiome of truffles in aroma formation: a meta-analysis approach. Appl Environ Microbiol 81(20), 6946-6952.

Wallace EC, Choi YJ, Thines M, Quesada-Ocampo LM (2015) First report of Plasmopara aff. australis on Luffa cylindrica in the United States. Plant Disease 10/2015. doi:10.1094/PDIS-06-15-0684-PDN.

 

2014

Bálint M, Schmidt P-A, Sharma R, Thines M, Schmitt, I (2014) An Illumina metabarcoding pipeline for fungi. Ecol Evol 4:2642-2653.

Beakes GW, Honda D, Thines M (2014) 3 Systematics of the Straminipila: Labyrinthulomycota, Hyphochytriomycota, and Oomycota. In Systematics and Evolution, 2nd Edition, The Mycota VII Part A D.J. McLaughlin and J.W. Statafora (Eds.), Springer Berlin Heidelberg pp. 39-97.

de Carvalho Junior AA, Esquivel Rios E, Piepenbring M (2014) A new species of Nyssopsora (Pucciniales) from Panama. Nova Hedwigia 99:65-70.

Freitag J, Ast J, Linne U, Stehlik T, Martorana D, Bölker M, Sandrock B (2014) Peroxisomes contribute to biosynthesis of extracellular glycolipids in fungi. Mol Microbiol 93:24-36.

Gafforov Y, Tomskowska M, Langer E, Zhou L-W (2014) Phylloporia yuchengii sp. nov. (Hymenochaetales, Basidiomycota) from Western Tien Shan Mountains of Uzbekistan based on phylogeny and morphology. Cryptogamie Mycologie 35:313-322.

Gassel S, Breitenbach J, Sandmann G (2014) Genetic engineering of the complete carotenoid pathway towards enhanced astaxanthin formation in Xanthophyllomyces dendrorhous starting from a high-yield mutant. Appl Microbiol Biotechnol 98:345-350.

Kirschner R, Cáceres O, Piepenbring M (2014) New records of foliicolous hyphomycetes (anamorphic Dothideomycetes) from tropical lowland in Chiriquí, Panamá. Puénte Biológico 6:1-17.

Kirschner R, Piepenbring M (2014) New records of three Ramochloridium species on banana leaves in Panama and Taiwan. Mycoscience 55:260-267.

Kirschner R, Piepenbring M (2014) Two new species of Passalora and Periconiella (cercosporoid hyphomycetes) from Panama. Cryptogamie Mycologie 35:151-156.

Kleofas V, Sommer L, Fraatz MA, Zorn H, Rühl M (2014) Fruiting body production and aroma profile analysis of Agrocybe aegerita cultivated on different substrates. Nat Resour 5:233-240.

Langer E, Langer G, Striegel M, Riebesehl J, Ordynets A (2014) Fungal diversity of the Kellerwald-Edersee National Park-indicator species of nature value and conservation. Nova Hedwigia 99:129-144.

Ledetzky N, Osawa A, Iki K, Pollmann H, Gassel S, Breitenbach J, Shindo K, Sandmann G (2014) Multiple transformation with the crtYB gene of the limiting enzyme increased carotenoid synthesis and generated novel derivatives in Xanthophyllomyces dendrorhous. Arch Biochem Biophys 545:141-147.

Mishra B, Thines M (2014) siMBa – a simple graphical user interface for the Bayesian phylogenetic inference program MrBayes. Mycol Progress 13:1255-1258.

Perdomo Sánchez O, Piepenbring M (2014) Species of Uromyces (Pucciniales, Basidiomycota) on Loranthaceae. Tropical Pl Pathol 39:141-153.

Popa  F, Rexer KH, Donges K, Yang ZL, Kost GW (2014) Three new Laccaria species from Southwest China (Yunnan). Mycol Progress 13:1105-1117.

Quin J, Feng B, Yang ZL, Li Y-G, Ratkowsky D, Gates G, Takahashi H, Rexer KH, Kost GW, Karunarathna SC (2014) The taxonomic foundation, species circumscription and continental endemisms of Singerocybe: evidence from morphological and molecular data. Mycologia 106:1015-1026.

Sandmann G (2014) Carotenoids of biotechnological importance. Adv Biochem Eng Biotechnol. Springer Verlag Berlin. doi:10.1007/10_2014_277.

Schimming O, Fleischhacker F, Nollmann FI, Bode HB (2014) Yeast homologous recombination cloning leading to the novel peptides ambactin and xenolindicin, ChemBioChem 15:1290-1294.

Sharma R, Mishra B, Runge F, Thines M (2014) Gene loss rather than gene gain is associated with a host jump from monocots to dicots in the smut fungus Melanopsichium pennsylvanicum. Genome Biol Evol 6:2034-2049.

Shen T, Hof LM, Hausmann H, Stadler M, Zorn H (2014) Development of an enzyme linked immunosorbent assay for detection of cyathane diterpenoids. BMC Biotechnol 14:98.

Stehlik T, Sandrock B, Ast J, Freitag J (2014) Fungal peroxisomes as biosynthetic organelles. Curr Opin Microbiol 22C:8-14.

Stiebler A, Freitag J, Schink KO, Stehlik T, Tillmann B, Ast J, Bölker M (2014) Ribosomal Readthrough at a Short UGA Stop Codon Context Triggers Dual Localization of Metabolic Enzymes in Fungi and Animals. PLOS Genetics doi: 10.1371/journal.pgen.1004685.

Tedersoo L, Bahram M, Põlme S, Kõljalg U, Yorou NS, Wijesundera R, Villarreal Ruiz L, Vasco-Palacios AM, Quang Thu P, Suija A, Smith ME, Sharp C, Saluveer E, Saitta A, Rosas M, Riit T, Ratkowsky D, Pritsch K, Põldmaa K, Piepenbring M, Phosri C, Peterson M, Parts K, Pärtel K, Otsing E, Nouhra E, Njouonkou AL, Nilsson RH, Morgado LN, Mayor J, May TW, Majuakim L, Lodge EJ, Lee S S, Larsson KH, Kohout P, Hosaka K, Hiiesalu I, Henkel TW, Harend H, Guo LD, Greslebin A, Grelet G, Geml J, Gates G, Dunstan W, Dunk C, Drenkhan R, Dearnaley J, De Kese A, Dang T, Chen X, Buegger F, Brearley FQ, Bonito G, Anslan S, Abell S, Abarenkov K (2014) Global diversity and geography of soil fungi. Science 346:1256688-1-10.

Thines M (2014) Phylogeny and evolution of plant pathogenic oomycetes – a global overview. European J Pl Pathol 138:431-447.

Yoshida K, Burbano HA, Krause J, Thines M, Weigel D & Kamoun S (2014). Mining herbaria for plant pathogen genomes: back to the future. PLoS Pathog 10(4), e1004028.

Zhu XT, Li YC, Wu G, Feng B, Zhao K, Gelardi M, Kost GW, Yang ZL (2014) The genus Imleria (Boletaceae) in East Asia. Phytotaxa 191:81-98.

 

2013

Bhandari DR, Shen T, Römpp A, Zorn H, Spengler B (2013) Analysis of cyathane type diterpenoids from Cyathus striatus and Hericium erinaceus by high resolution MS Imaging. Anal Bioanal Chem 406:695-704.

Bosse AK, Fraatz MA, Zorn H (2013): Formation of complex natural flavors by biotransformation of apple pomace with basidiomycetes. Food Chem 141:2952–2959.

Gassel S, Schewe H, Schmidt I, Schrader J, Sandmann G (2013) Multiple improvement of astaxanthin biosynthesis in Xanthophyllomyces dendrorhous by a combination of conventional mutagenesis and metabolic pathway engineering. Biotechnol Lett. 35, 565-569.

Keim J, Mishra B, Sharma R, Ploch S, Thines M (2013) Root-associated fungi of Arabidopsis thaliana and Microthlaspi perfoliatum. Fungal Diversity 66:99-111.

Ledetzky N, Osawa A, Iki K, Pollmann H, Gassel S, Breitenbach J, Shindo K, Sandmann G (accepted 2013, printed in 2014) Multiple transformation with the crtYB gene of the limiting enzyme increased carotenoid synthesis and generated novel derivatives in Xanthophyllomyces dendrorhous. Arch Biochem Biophys. 545, 141-147.

Philipp O, Hamann A, Servos J, Werner A, Koch I, Osiewacz HD (2013) A genome-wide longitudinal transcriptome analysis of the aging model Podospora anserina. PLoS ONE 8: e83109. doi: 10.1371/journal.pone.0083109

Schüttmann I, Bouws H, Szweda RT, Suckow M, Czermak P, Zorn H (2013) Induction, characterization, and heterologous expression of a carotenoid degrading versatile peroxidase from Pleurotus sapidus. J Mol Catal B: Enzym 103:79-84.

Weidmann V, Schaffrath M, Zorn H, Rehbein J, Maison W (2013) Elucidation of the regio- and chemoselectivity of enzymatic allylic oxidations with Pleurotus sapidus - conversion of selected spirocyclic terpenoids and computational analysis. Beilstein J Org Chem 9:2233-2241.

                                                                                                                                                                       

Lotz-Winter H, Piepenbring M (2014) 9. Pilze im botanischen Garten. In: M. Jenny, M. Wessel & C. Winter (Hrsg.) Der Botanische Garten Frankfurt am Main. Ein illustrierter Führer. Freundeskreis Botanischer Garten Frankfurt am Main e.V., Norderstedt, S. 74-79.

BioFrankfurt e.V. (2014) Biozahl. Tausend Pilze auf tausend Schritten. Piepenbring M http://www.biofrankfurt.de/presse/detailansicht/article/biofrankfurt-widmet-die-biozahl-2014-der-ueberraschend-grossen-pilzvielfalt-im-taunus-tausend-pilze.html